PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AS_F08B3720F.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 706aa    MW: 82435.1 Da    PI: 8.9293
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AS_F08B3720F.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.15.9e-1819104191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fY+ YAk+ GF v ++++++  +++ +t  t+ Cs++gk++ + k+   +  ++++tr++C ak + +++ ++k+++t+l l+HnH+
  Traes_1AS_F08B3720F.2  19 RFYKGYAKKKGFGVMRRTTRYG-EDNMVTYFTLACSRQGKTQCSAKN---SFMPNPSTRMQCPAKSNFSRR-EEKFCITSLTLDHNHP 101
                            5***************999998.5666****************9999...999*****************9.9**************9 PP

                   FAR1  89 lap 91 
                            ++p
  Traes_1AS_F08B3720F.2 102 ISP 104
                            875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-1519104IPR004330FAR1 DNA binding domain
PfamPF105513.6E-38225318IPR018289MULE transposase domain
PROSITE profilePS509669.878518554IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-5529556IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MTLEPKKGMV FDSEDDAVRF YKGYAKKKGF GVMRRTTRYG EDNMVTYFTL ACSRQGKTQC  60
SAKNSFMPNP STRMQCPAKS NFSRREEKFC ITSLTLDHNH PISPSKSRFL RCHKKLDLHS  120
KRRLELNDQA GIRMNKNFGS LVMEAGGYGN LEFGEKECRN YLQEKRRLQL GAGDAHAVYQ  180
YFLRMQSKDP DFFHVMDVAE DGRLRNVFWA DARSRAAYES YWDAITFDTT YLTNKYKMPF  240
APFVGVNHHG ESVLLGCGLL SNEDTETFVW LFKSWLCCMS YKPPNAIITD QCKAMQNAIE  300
EVFPQTRHRW CIWHIMKKIP EKLSGYEKYE KIKYTLSNVV YDSLTKHDFD KAWAEMINKY  360
DLQDNEWLAG LYDNKNRWVP AYVKDTFWAG MSSTQRSESM NSFFDGYVNA RTTLKQFVEQ  420
YENALRDKVE KENKADSKSF QEEIPCITHY DFEKQFQAAY TNAKFQEFQE QLRGKIYCYP  480
SLLNKQGSLF SFGVSEDRKI FFEGEDGEIK EKWIASEFTV LFNQEECDVQ CICRLFEFRG  540
ILCSHIISVL ALMKIRDVPS RYILQRWRKD FKRKHTFIKC SYGDMLNTPV VQRYDDLCKR  600
SREVAEKGAE SDTLRDLVMD GLDELERKIE AYCASQDVQE DGPTSKQEDT MLNKEKLVLS  660
PIPVRSVGRP PSKRKMSKVD QVIKKLRAKK RHVPKTTTKV PSQKQG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1668678RPPSKRKMSKV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00434DAPTransfer from AT4G15090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756066.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLW4ZZ070.0W4ZZ07_WHEAT; Uncharacterized protein
STRINGBRADI2G36810.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-125FAR1 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]